Package: mire 0.0.1.9000

Yun Peng

mire: Microbiome Integrated Reconstruction and Estimation

An integrated framework for microbiome reconstruction from sequencing data. It leverages tools like Kraken2 for taxonomic classification and combines cell barcodes, UMIs, and k-mer-based quantification to reconstruct microbial signals. Designed for both bulk and single-cell sequencing data, the package enables taxonomic and quantitative profiling of microbial communities.

Authors:Yun Peng [aut, cre]

mire_0.0.1.9000.tar.gz
mire_0.0.1.9000.tgz(r-4.6-x86_64)mire_0.0.1.9000.tgz(r-4.6-arm64)mire_0.0.1.9000.tgz(r-4.5-x86_64)mire_0.0.1.9000.tgz(r-4.5-arm64)
mire_0.0.1.9000.tar.gz(r-4.7-arm64)mire_0.0.1.9000.tar.gz(r-4.7-x86_64)mire_0.0.1.9000.tar.gz(r-4.6-arm64)mire_0.0.1.9000.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mire/json (API)

# Install 'mire' in R:
install.packages('mire', repos = c('https://wanglabcsu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wanglabcsu/mire/issues

On CRAN:

Conda:

rustcargo

2.90 score 4 stars 3 scripts 16 exports 19 dependencies

Last updated from:c0eee75eeb. Checks:8 WARNING, 1 OK, 6 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING137
linux-devel-x86_64WARNING154
source / vignettesOK200
linux-release-arm64WARNING133
linux-release-x86_64WARNING149
macos-release-arm64WARNING143
macos-release-x86_64WARNING354
macos-oldrel-arm64WARNING141
macos-oldrel-x86_64WARNING356
windows-devel-arm64FAIL296
windows-devel-x86_64FAIL129
windows-release-arm64FAIL311
windows-release-x86_64FAIL120
windows-oldrel-x86_64FAIL144
wasm-releaseFAIL102

Exports:blsddenoise_countsembedembed_trimkoutreadskractor_koutputkractor_readskraken2krcountread_kreportrpmm_quantileseq_rangeseq_refineslsdtagtrim

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemirainanonextR6RColorBrewerrlangS7scalesvctrsviridisLitewithr