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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mire" in publications use:'
type: software
license: MIT
title: 'mire: Microbiome Integrated Reconstruction and Estimation'
version: 0.0.1.9000
doi: 10.32614/CRAN.package.mire
abstract: An integrated framework for microbiome reconstruction from sequencing data.
  It leverages tools like Kraken2 for taxonomic classification and combines cell barcodes,
  UMIs, and k-mer-based quantification to reconstruct microbial signals. Designed
  for both bulk and single-cell sequencing data, the package enables taxonomic and
  quantitative profiling of microbial communities.
authors:
- family-names: Peng
  given-names: Yun
  email: yunyunp96@163.com
  orcid: https://orcid.org/0000-0003-2801-3332
repository: https://wanglabcsu.r-universe.dev
repository-code: https://github.com/WangLabCSU/mire
commit: 566070a04b4776049e03e79e1b6d516a98b0c38f
url: https://github.com/WangLabCSU/mire
date-released: '2025-07-18'
contact:
- family-names: Peng
  given-names: Yun
  email: yunyunp96@163.com
  orcid: https://orcid.org/0000-0003-2801-3332