Package: mire
Title: Microbiome Integrated Reconstruction and Estimation
Version: 0.0.1.9000
Authors@R: 
    person("Yun", "Peng", , "pengyun.me@outlook.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2801-3332"))
Description: An integrated framework for microbiome reconstruction from
        sequencing data. It leverages tools like Kraken2 for taxonomic
        classification and combines cell barcodes, UMIs, and
        k-mer-based quantification to reconstruct microbial signals.
        Designed for both bulk and single-cell sequencing data, the
        package enables taxonomic and quantitative profiling of
        microbial communities.
License: MIT + file LICENSE
URL: https://github.com/WangLabCSU/mire
BugReports: https://github.com/WangLabCSU/mire/issues
Depends: R (>= 4.2)
Imports: mirai, cli, rlang, ggplot2, utils
ByteCompile: true
Encoding: UTF-8
Config/build/copy-method: link
Config/roxygen2/version: 8.0.0
Roxygen: list(markdown = TRUE)
SystemRequirements: Cargo (Rust's package manager), rustc, kraken2
Config/pak/sysreqs: libclang-dev
Repository: https://wanglabcsu.r-universe.dev
Date/Publication: 2026-07-23 10:35:44 UTC
RemoteUrl: https://github.com/WangLabCSU/mire
RemoteRef: HEAD
RemoteSha: dd6dbe60186721ffd51c396609f651195cfc5485
NeedsCompilation: yes
Packaged: 2026-07-23 11:04:30 UTC; root
Author: Yun Peng [aut, cre] (ORCID: <https://orcid.org/0000-0003-2801-3332>)
Maintainer: Yun Peng <pengyun.me@outlook.com>