To cite package ‘mire’ in publications use: Peng Y (2025). _mire: Microbiome Integrated Reconstruction and Estimation_. R package version 0.0.1.9000, . A BibTeX entry for LaTeX users is @Manual{, title = {mire: Microbiome Integrated Reconstruction and Estimation}, author = {Yun Peng}, year = {2025}, note = {R package version 0.0.1.9000}, url = {https://github.com/wanglabcsu/mire}, }