{ "_id": "6a1f0005b401979e7341ac1a", "Package": "bregr", "Title": "Easy and Efficient Batch Processing of Regression Models", "Version": "1.4.0", "Authors@R": "c(\nperson(\"Shixiang\", \"Wang\", , \"w_shixiang@163.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9855-7357\")),\nperson(\"Yun\", \"Peng\", , \"yunyunp96@163.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-2801-3332\")),\nperson(\"Chenyang\", \"Shu\", , \"402221506@qq.com\", role = \"aut\")\n)", "Maintainer": "Shixiang Wang ", "Description": "Easily processes batches of univariate or multivariate\nregression models. Returns results in a tidy format and\ngenerates visualization plots for straightforward\ninterpretation (Wang, Shixiang, et al. (2025)\n).", "License": "GPL (>= 3)", "URL": "https://github.com/WangLabCSU/bregr,\nhttps://wanglabcsu.github.io/bregr/", "BugReports": "https://github.com/WangLabCSU/bregr/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE, roclets = c(\"collate\", \"namespace\",\n\"rd\", \"roxytest::testthat_roclet\"))", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake make libicu-dev libx11-dev zlib1g-dev", "Repository": "https://wanglabcsu.r-universe.dev", "Date/Publication": "2026-01-18 07:29:22 UTC", "RemoteUrl": "https://github.com/WangLabCSU/bregr", "RemoteRef": "HEAD", "RemoteSha": "b9b55d11315e938199876435fc496cb3c9812439", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-18 09:06:27 UTC", "User": "root" }, "Author": "Shixiang Wang [aut, cre] (ORCID:\n),\nYun Peng [aut] (ORCID: ),\nChenyang Shu [aut]", "MD5sum": "d60564f2bb7dcc8ccd4de701084e642e", "_user": "wanglabcsu", "_type": "src", "_file": "bregr_1.4.0.tar.gz", "_fileid": "6dc2b5a0e6cdfe2019b19804b148b1b50d9f78e464f49568a2636d8f7a1ad8da", "_filesize": 2274456, "_sha256": "6dc2b5a0e6cdfe2019b19804b148b1b50d9f78e464f49568a2636d8f7a1ad8da", "_created": "2026-05-18T09:06:27.000Z", "_published": "2026-06-02T16:08:37.758Z", "_distro": "noble", "_jobs": [ { "job": 79116419693, "time": 337, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7053818176" }, { "job": 79116419766, "time": 374, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7053831200" }, { "job": 79116419536, "time": 229, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7053780283" }, { "job": 79116419824, "time": 291, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7053802203" }, { "job": 79116419112, "time": 315, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7053700695" }, { "job": 79116418414, "time": 176, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7363281436" }, { "job": 79116419457, "time": 319, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7053811325" }, { "job": 79116419521, "time": 264, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7053792062" }, { "job": 79116419468, "time": 255, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7053789279" } ], "_buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/WangLabCSU/bregr", "_commit": { "id": "b9b55d11315e938199876435fc496cb3c9812439", "author": "Shixiang Wang (王诗翔) ", "committer": "Shixiang Wang (王诗翔) ", "message": "Update NEWS and cran-comments for new features and changes\n\nAdded notes about new functions `br_compare_models()` and `br_show_forest_comparison` in NEWS.md. Updated cran-comments.md to mention the replacement of the deprecated `qs` package with `qs2`.\n", "time": 1768721362 }, "_maintainer": { "name": "Shixiang Wang", "email": "w_shixiang@163.com", "login": "shixiangwang", "orcid": "0000-0001-9855-7357", "twitter": "@WangShxiang", "description": "形每万变，神唯守一。", "uuid": 25057508 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "broom", "role": "Imports" }, { "package": "broom.helpers", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "forestploter", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "insight", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "mirai", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "rlang", "version": ">= 1.1.0", "role": "Imports" }, { "package": "S7", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "vctrs", "version": ">= 0.5.0", "role": "Imports" }, { "package": "broom.mixed", "role": "Suggests" }, { "package": "fs", "role": "Suggests" }, { "package": "ggalign", "role": "Suggests" }, { "package": "ggnewscale", "role": "Suggests" }, { "package": "ggstats", "role": "Suggests" }, { "package": "ggstatsplot", "role": "Suggests" }, { "package": "gtsummary", "role": "Suggests" }, { "package": "ids", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "lme4", "role": "Suggests" }, { "package": "merDeriv", "role": "Suggests" }, { "package": "parallel", "role": "Suggests" }, { "package": "qs2", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "UCSCXenaShiny", "role": "Suggests" }, { "package": "visreg", "role": "Suggests" } ], "_owner": "wanglabcsu", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-21", "n": 8 }, { "week": "2025-22", "n": 1 }, { "week": "2025-24", "n": 12 }, { "week": "2025-25", "n": 20 }, { "week": "2025-26", "n": 4 }, { "week": "2025-27", "n": 3 }, { "week": "2025-30", "n": 3 }, { "week": "2025-32", "n": 52 }, { "week": "2025-33", "n": 5 }, { "week": "2025-34", "n": 3 }, { "week": "2025-35", "n": 1 }, { "week": "2025-39", "n": 2 }, { "week": "2025-51", "n": 3 }, { "week": "2025-52", "n": 2 }, { "week": "2026-03", "n": 5 } ], "_tags": [ { "name": "v1.0.0", "date": "2025-06-19" }, { "name": "v1.1.0", "date": "2025-08-10" } ], "_stars": 15, "_contributors": [ { "user": "shixiangwang", "count": 159, "uuid": 25057508 }, { "user": "copilot", "count": 60, "uuid": 198982749 }, { "user": "leslie-lu", "count": 1, "uuid": 97180759 } ], "_userbio": { "uuid": 177597689, "type": "organization", "name": "Laboratory of *In Silico* Oncology and Medicine (LISOM)", "description": "Dr. Shixiang Wang' lab at Central South University" }, "_downloads": { "count": 231, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bregr" }, "_devurl": "https://github.com/wanglabcsu/bregr", "_pkgdown": "https://wanglabcsu.github.io/bregr/", "_searchresults": 19, "_rbuild": "4.6.0", "_assets": [ "extra/bregr.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/wanglabcsu/bregr", "_realowner": "wanglabcsu", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2025-06-28" }, { "version": "1.2.0", "date": "2025-08-19" }, { "version": "1.3.0", "date": "2025-09-22" }, { "version": "1.3.1", "date": "2025-12-17" }, { "version": "1.4.0", "date": "2026-01-18" } ], "_exports": [ "br_avail_method_config", "br_avail_methods", "br_avail_methods_use_exp", "br_compare_models", "br_diagnose", "br_get_config", "br_get_data", "br_get_group_by", "br_get_model", "br_get_model_names", "br_get_models", "br_get_n_x", "br_get_n_x2", "br_get_results", "br_get_x", "br_get_x2", "br_get_y", "br_pipeline", "br_predict", "br_rename_models", "br_run", "br_set_model", "br_set_x", "br_set_x2", "br_set_y", "br_show_coxph_diagnostics", "br_show_fitted_line", "br_show_fitted_line_2d", "br_show_forest", "br_show_forest_circle", "br_show_forest_comparison", "br_show_forest_ggstats", "br_show_forest_ggstatsplot", "br_show_nomogram", "br_show_residuals", "br_show_risk_network", "br_show_survival_curves", "br_show_table", "br_show_table_gt", "breg", "polar_connect", "polar_init" ], "_help": [ { "page": "accessors", "title": "Accessor functions for 'breg' objects", "concept": [ "accessors" ], "topics": [ "accessors", "br_get_config", "br_get_data", "br_get_group_by", "br_get_model", "br_get_models", "br_get_model_names", "br_get_n_x", "br_get_n_x2", "br_get_results", "br_get_x", "br_get_x2", "br_get_y", "br_rename_models" ] }, { "page": "avails", "title": "Package availability", "topics": [ "avails", "br_avail_methods", "br_avail_methods_use_exp", "br_avail_method_config" ] }, { "page": "br_compare_models", "title": "Compare univariate and multivariate models", "concept": [ "br_compare" ], "topics": [ "br_compare_models" ] }, { "page": "br_diagnose", "title": "Diagnose regression models", "concept": [ "accessors" ], "topics": [ "br_diagnose" ] }, { "page": "br_predict", "title": "Predict method for breg objects", "concept": [ "accessors" ], "topics": [ "br_predict" ] }, { "page": "br_show_coxph_diagnostics", "title": "Show Cox proportional hazards model diagnostic plots", "concept": [ "br_show" ], "topics": [ "br_show_coxph_diagnostics" ] }, { "page": "br_show_fitted_line", "title": "Show fitted regression line with 'visreg' interface", "concept": [ "br_show" ], "topics": [ "br_show_fitted_line" ] }, { "page": "br_show_fitted_line_2d", "title": "Show 2d fitted regression line with 'visreg' interface", "concept": [ "br_show" ], "topics": [ "br_show_fitted_line_2d" ] }, { "page": "br_show_forest", "title": "Show a forest plot for regression results", "concept": [ "br_show" ], "topics": [ "br_show_forest" ] }, { "page": "br_show_forest_circle", "title": "Show a circular forest plot for regression results", "concept": [ "br_show" ], "topics": [ "br_show_forest_circle" ] }, { "page": "br_show_forest_comparison", "title": "Show forest plot for model comparison", "concept": [ "br_compare" ], "topics": [ "br_show_forest_comparison" ] }, { "page": "br_show_forest_ggstats", "title": "Show a forest plot with 'ggstats' interface", "concept": [ "br_show" ], "topics": [ "br_show_forest_ggstats" ] }, { "page": "br_show_forest_ggstatsplot", "title": "Show a forest plot with 'ggstatsplot' interface", "concept": [ "br_show" ], "topics": [ "br_show_forest_ggstatsplot" ] }, { "page": "br_show_nomogram", "title": "Show nomogram for regression models", "concept": [ "br_show" ], "topics": [ "br_show_nomogram" ] }, { "page": "br_show_residuals", "title": "Show residuals vs fitted plot for regression models", "concept": [ "br_show" ], "topics": [ "br_show_residuals" ] }, { "page": "br_show_risk_network", "title": "Show connected risk network plot", "concept": [ "br_show", "risk_network" ], "topics": [ "br_show_risk_network" ] }, { "page": "br_show_survival_curves", "title": "Show survival curves based on model scores", "concept": [ "br_show" ], "topics": [ "br_show_survival_curves" ] }, { "page": "br_show_table", "title": "Show model tidy results in table format", "concept": [ "br_show" ], "topics": [ "br_show_table" ] }, { "page": "br_show_table_gt", "title": "Show regression models with 'gtsummary' interface", "concept": [ "br_show" ], "topics": [ "br_show_table_gt" ] }, { "page": "breg", "title": "Creates a new breg-class object", "topics": [ "breg" ] }, { "page": "pipeline", "title": "Modeling and analysis pipeline", "topics": [ "br_pipeline", "br_run", "br_set_model", "br_set_x", "br_set_x2", "br_set_y", "pipeline" ] }, { "page": "polar_connect", "title": "Connects dots", "concept": [ "risk_network" ], "topics": [ "polar_connect" ] }, { "page": "polar_init", "title": "Init a dot plot in polar system", "concept": [ "risk_network" ], "topics": [ "polar_init" ] }, { "page": "print.breg", "title": "Print method for breg object", "topics": [ "print.breg" ] }, { "page": "print.breg_comparison", "title": "Print method for breg_comparison object", "topics": [ "print.breg_comparison" ] } ], "_pkglogo": "https://github.com/WangLabCSU/bregr/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/WangLabCSU/bregr/raw/HEAD/README.md", "_rundeps": [ "backports", "bit", "bit64", "broom", "broom.helpers", "cards", "cli", "clipr", "cpp11", "crayon", "dplyr", "farver", "forcats", "forestploter", "generics", "ggplot2", "glue", "gridExtra", "gtable", "haven", "hms", "insight", "isoband", "labeling", "labelled", "lattice", "lifecycle", "magrittr", "Matrix", "mirai", "nanonext", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "RColorBrewer", "readr", "rlang", "S7", "scales", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_vignettes": [ { "source": "bregr-group-by.Rmd", "filename": "bregr-group-by.html", "title": "Group Regression Analysis and Visualization", "author": "Shixiang Wang", "engine": "knitr::rmarkdown", "headings": [], "created": "2025-06-19 05:07:34", "modified": "2025-08-27 02:02:01", "commits": 8 }, { "source": "model-config.Rmd", "filename": "model-config.html", "title": "Model Configurations", "author": "Shixiang Wang", "engine": "knitr::rmarkdown", "headings": [ "Interaction Terms", "Customized GLM Family" ], "created": "2025-08-05 09:25:38", "modified": "2025-08-06 08:09:29", "commits": 4 }, { "source": "quick-analyze-cancer-data.Rmd", "filename": "quick-analyze-cancer-data.html", "title": "Quickly Analyze Cancer Data with Data from UCSCXenaShiny", "author": "Shixiang Wang", "engine": "knitr::rmarkdown", "headings": [ "Obtain Data", "Execute bregr Pipeline", "Generate Visualizations", "Explore Further" ], "created": "2025-08-07 05:22:47", "modified": "2025-08-19 09:56:11", "commits": 2 }, { "source": "save-model-file.Rmd", "filename": "save-model-file.html", "title": "Save Models to Local Disk", "author": "Shixiang Wang", "engine": "knitr::rmarkdown", "headings": [], "created": "2025-08-07 02:59:30", "modified": "2025-08-07 02:59:30", "commits": 1 }, { "source": "supported-models.Rmd", "filename": "supported-models.html", "title": "Supported Models", "author": "Shixiang Wang", "engine": "knitr::rmarkdown", "headings": [ "Default Supported Models", "Linear Models", "Logistic Models", "Cox-PH Models", "Extended Supported Models" ], "created": "2025-08-05 09:25:38", "modified": "2025-08-06 08:09:29", "commits": 2 } ], "_score": 7.32990612340021, "_indexed": true, "_nocasepkg": "bregr", "_universes": [ "wanglabcsu", "shixiangwang" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.4.0", "date": "2026-05-18T09:09:41.000Z", "distro": "noble", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "09397684cba587e81248a1722cec926c798d0cebab4dbdbd2702ce77497a82f1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.6.0", "os": "linux", "version": "1.4.0", "date": "2026-05-18T09:10:20.000Z", "distro": "noble", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "768887373d87e012966e3d14afe51eb8a3ca4ef4c394aa4c27aeed8dc56cdeef", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.5.3", "os": "mac", "version": "1.4.0", "date": "2026-05-18T09:08:40.000Z", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "cd1ccc0e2e6b22ad37c47d1a099697e5ffa8d77aee6d3f0fef531077c25ff822", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.6.0", "os": "mac", "version": "1.4.0", "date": "2026-05-18T09:08:56.000Z", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "a0493c79c6bb8a4ea707abb26df52699b5e335e62a408e73c84b42431e11ae91", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.7.0", "os": "win", "version": "1.4.0", "date": "2026-05-18T09:09:26.000Z", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "670717dfcaf092d215cbb7760a0b2035d109f9aa09386f4213b5eaf7afd414c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.5.3", "os": "win", "version": "1.4.0", "date": "2026-05-18T09:08:12.000Z", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "29cced4e33b163c5ea359bd67ffe1a1170e9f33f85f6cf9c47512d820e68bdd0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.6.0", "os": "win", "version": "1.4.0", "date": "2026-05-18T09:08:20.000Z", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "4b882c380583f2ad985753fb2c8244ece0d100784e6126d21e54c353113b0e6e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" }, { "r": "4.6.0", "os": "wasm", "version": "1.4.0", "date": "2026-06-02T16:08:19.000Z", "commit": "b9b55d11315e938199876435fc496cb3c9812439", "fileid": "d738e39c5e74989eed0df1dd020cdc5494337ff24e47af44b4876db108ec101d", "status": "success", "buildurl": "https://github.com/r-universe/wanglabcsu/actions/runs/26023751218" } ] }